Hokkaido University Institute for Chemical Reaction Design and Discovery

2023

• Comparative Pathogenicity of SARS-CoV-2 Omicron Subvariants Including BA.1, BA.2, and BA.5
  T. Tamura, D. Yamasoba, Y. Oda, J. Ito, T. Kamasaki, N. Nao, R. Hashimoto, Y. Fujioka, R. Suzuki, L. Wang, H. Ito, Y. Kashima, I. Kimura, M. Kishimoto, M. Tsuda, H. Sawa, K. Yoshimatsu, Y. Yamamoto, T. Nagamoto, J. Kanamune, Y. Suzuki, Y. Ohba, I. Yokota, K. Matsuno, K. Takayama, S. Tanaka, K. Sato, T. Fukuhara, G. P. J. Genotype Phenotype Japan, Communications Biology, 2023, 6, Article number: 772
  DOI: 10.1038/s42003-023-05081-w
  
• Convergent Evolution of SARS-CoV-2 Omicron Subvariants Leading to the Emergence of BQ.1.1 Variant
  J. Ito, R. Suzuki, K. Uriu, Y. Itakura, J. Zahradnik, K. T. Kimura, S. Deguchi, L. Wang, S. Lytras, T. Tamura, I. Kida, H. Nasser, M. Shofa, M. M. Begum, M. Tsuda, Y. Oda, T. Suzuki, J. Sasaki, K. Sasaki-Tabata, S. Fujita, K. Yoshimatsu, H. Ito, N. Nao, H. Asakura, M. Nagashima, K. Sadamasu, K. Yoshimura, Y. Yamamoto, T. Nagamoto, J. Kuramochi, G. Schreiber, A. Saito, K. Matsuno, K. Takayama, T. Hashiguchi, S. Tanaka, T. Fukuhara, T. Ikeda, K. Sato, S. Suzuki, M. Kato, Z. Ferdous, H. Mouri, K. Shishido, N. Misawa, I. Kimura, Y. Kosugi, P. Lin, M. Suganami, M. Chiba, R. Yoshimura, K. Yasuda, K. Iida, N. Ohsumi, A. P. Strange, D. Sauter, S. Nakagawa, J. Q. Wu, Y. Watanabe, A. Sakamoto, N. Yasuhara, Y. Nakajima, H. Yajima, K. Shirakawa, A. Takaori-Kondo, K. Nagata, Y. Kazuma, R. Nomura, Y. Horisawa, Y. Tashiro, Y. Kawa, T. Irie, R. Kawabata, R. Shimizu, O. Takahashi, K. Ichihara, C. Motozono, M. Toyoda, T. Ueno, Y. Shibatani, T. Nishiuchi, G. P. J. Genotype Phenotype Japan, Nat. Commun., 2023, 14, 2671,
  DOI: 10.1038/s41467-023-38188-z
  
• Virological Characteristics of the SARS-CoV-2 XBB Variant Derived from Recombination of Two Omicron Subvariants
  T. Tamura, J. Ito, K. Uriu, J. Zahradnik, I. Kida, Y. Anraku, H. Nasser, M. Shofa, Y. Oda, S. Lytras, N. Nao, Y. Itakura, S. Deguchi, R. Suzuki, L. Wang, M. Begum, S. Kita, H. Yajima, J. Sasaki, K. Sasaki-Tabata, R. Shimizu, M. Tsuda, Y. Kosugi, S. Fujita, L. Pan, D. Sauter, K. Yoshimatsu, S. Suzuki, H. Asakura, M. Nagashima, K. Sadamasu, K. Yoshimura, Y. Yamamoto, T. Nagamoto, G. Schreiber, K. Maenaka, T. Hashiguchi, T. Ikeda, T. Fukuhara, A. Saito, S. Tanaka, K. Matsuno, K. Takayama, K. Sato, G. P. J. Genotype Phenotype Japan, Nat. Commun., 2023, 14, 2671
  DOI: 10.1038/s41467-023-38435-3
  
• Geometrical Analysis Identified Morphological Features of Hydrogel- Induced Cancer Stem Cells in Synovial Sarcoma Model Cells
  Z. Ferdous, J. E. Clement, J. P. Gong, S. Tanaka, T. Komatsuzaki, M. Tsuda, Biochemical and Biophysical Research Communications, 2023, 642, 41-49
  DOI: 10.1016/j.bbrc.2022.12.040
  

2022

• Virological Characteristics of the SARS-CoV-2 Omicron BA.2 Subvariants, Including BA.4 and BA.5
  I. Kimura, D. Yamasoba, T. Tamura, N. Nao, T. Suzuki, Y. Oda, S. Mitoma, J. Ito, H. Nasser, J. Zahradnik, K. Uriu, S. Fujita, Y. Kosugi, L. Wang, M. Tsuda, M. Kishimoto, H. Ito, R. Suzuki, R. Shimizu, M. M. Begum, K. Yoshimatsu, K. T. Kimura, J. Sasaki, K. Sasaki-Tabata, Y. Yamamoto, T. Nagamoto, J. Kanamune, K. Kobiyama, H. Asakura, M. Nagashima, K. Sadamasu, K. Yoshimura, K. Shirakawa, A. Takaori-Kondo, J. Kuramochi, G. Schreiber, K. J. Ishii, T. Hashiguchi, T. Ikeda, A. Saito, T. Fukuhara, S. Tanaka, K. Matsuno, K. Sato, G. P. J. Genotype Phenotype Japan, Cell, 2022, 185, 3992-4007.e16
  DOI: 10.1016/j.cell.2022.09.018
  
• Force-Triggered Rapid Microstructure Growth on Hydrogel Surface for On-Demand Functions
  Q. F. Mu, K. P. Cui, Z. J. Wang, T. Matsuda, W. Cui, H. Kato, S. Namiki, T. Yamazaki, M. Frauenlob, T. Nonoyama, M. Tsuda, S. Tanaka, T. Nakajima, J. P. Gong, Nat. Commun., 2022, 13,
  DOI: 10.1038/s41467-022-34044-8
  
• Virological Characteristics of the SARS-CoV-2 Omicron BA.2.75 Variant
  A. Saito, T. Tamura, J. Zahradnik, S. Deguchi, K. Tabata, Y. Anraku, I. Kimura, J. Ito, D. Yamasoba, H. Nasser, M. Toyoda, K. Nagata, K. Uriu, Y. Kosugi, S. Fujita, M. Shofa, M. M. Begum, R. Shimizu, Y. Oda, R. Suzuki, H. Ito, N. Nao, L. Wang, M. Tsuda, K. Yoshimatsu, J. Kuramochi, S. Kita, K. Sasaki-Tabata, H. Fukuhara, K. Maenaka, Y. Yamamoto, T. Nagamoto, H. Asakura, M. Nagashima, K. Sadamasu, K. Yoshimura, T. Ueno, G. Schreiber, A. Takaori-Kondo, K. Shirakawa, H. Sawa, T. Irie, T. Hashiguchi, K. Takayama, K. Matsuno, S. Tanaka, T. Ikeda, T. Fukuhara, K. Sato, G. P. J. Genotype Phenotype Japan, Cell Host & Microbe, 2022, 30, 1540-+
  DOI: 10.1016/j.chom.2022.10.003
  
• Evaluation of the Context of Downstream N- and Free N-Glycomic Alterations Induced by Swainsonine in HepG2 Cells
  C. Morikawa, K. Sugiura, K. Kondo, Y. Yamamoto, Y. Kojima, Y. Ozawa, H. Yoshioka, N. Miura, J. H. Piao, K. Okada, H. Hanamatsu, M. Tsuda, S. Tanaka, J. I. Furukawa, Y. Shinohara, Biochimica Et Biophysica Acta-General Subjects, 2022, 1866,
  DOI: 10.1016/j.bbagen.2022.130168
  
• Virological Characteristics of the SARS-CoV-2 Omicron BA.2 Spike
  D. Yamasoba, I. Kimura, H. Nasser, Y. Morioka, N. Nao, J. Ito, K. Uriu, M. Tsuda, J. Zahradnik, K. Shirakawa, R. Suzuki, M. Kishimoto, Y. Kosugi, K. Kobiyama, T. Hara, M. Toyoda, Y. L. Tanaka, E. P. Butlertanaka, R. Shimizu, H. Ito, L. Wang, Y. Oda, Y. Orba, M. Sasaki, K. Nagata, K. Yoshimatsu, H. Asakura, M. Nagashima, K. Sadamasu, K. Yoshimura, J. Kuramochi, M. Seki, R. Fujiki, A. Kaneda, T. Shimada, T. Nakada, S. Sakao, T. Suzuki, T. Ueno, A. Takaori-Kondo, K. J. Ishii, G. Schreiber, H. Sawa, A. Saito, T. Irie, S. Tanaka, K. Matsuno, T. Fukuhara, T. Ikeda, K. Sato, Cell, 2022, 185, 2103-+
  DOI: 10.1016/j.cell.2022.04.035
  
• Novel Hydrogel X Induces Cancer Stemness by Involving in Epigenetic Regulation
  J. Suzuka, M. Tsuda, L. Wang, K. Kumegawa, R. Maruyama, S. Tanaka, Cancer Sci., 2022, 113, 747-747
  DOI:
  
• Double Network Hydrogel as Novel Microenvironment Enhances Osteopontin and Reprogramming of Cancer Stem Cells
  S. Tanaka, J. Suzuka, L. Wang, M. Tsuda, Cancer Sci., 2022, 113, 746-746
  DOI:
  
• Aberrant Expression of MYD88 via RNA-Controlling CNOT4 and EXOSC3 in Normal Mucosa Influences Onset of Colonic Cancer
  M. Tsuda, L. Wang, S. Hirano, M. Asaka, S. Tanaka, Cancer Sci., 2022, 113,
  DOI:
  
• Attenuated Fusogenicity and Pathogenicity of SARS-CoV-2 Omicron Variant
  R. Suzuki, D. Yamasoba, I. Kimura, L. Wang, M. Kishimoto, J. Ito, Y. Morioka, N. Nao, H. Nasser, K. Uriu, Y. Kosugi, M. Tsuda, Y. Orba, M. Sasaki, R. Shimizu, R. Kawabata, K. Yoshimatsu, H. Asakura, M. Nagashima, K. Sadamasu, K. Yoshimura, H. Sawa, T. Ikeda, T. Irie, K. Matsuno, S. Tanaka, T. Fukuhara, K. Sato, G. P. J. Genotype Phenotype Japan, Nature, 2022, 603, 700-+
  DOI: 10.1038/s41586-022-04462-1
  
• Novel Rapid Immunohistochemistry Using an Alternating Current Electric Field Identifies Rac and Cdc42 Activation in Human Colon Cancer FFPE Tissues
  M. Tsuda, R. Horio, L. Wang, T. Takenami, J. Moriya, J. Suzuka, H. Sugino, Z. Tanei, M. Tanino, S. Tanaka, Scientific Reports, 2022, 12,
  DOI: 10.1038/s41598-022-05892-7
  

2021

• Enhanced Fusogenicity and Pathogenicity of SARS-CoV-2 Delta P681R Mutation
  A. Saito, T. Irie, R. Suzuki, T. Maemura, H. Nasser, K. Uriu, Y. Kosugi, K. Shirakawa, K. Sadamasu, I. Kimura, J. Ito, J. Q. Wu, K. Iwatsuki-Horimoto, M. Ito, S. Yamayoshi, S. Loeber, M. Tsuda, L. Wang, S. Ozono, E. P. Butlertanaka, Y. L. Tanaka, R. Shimizu, K. Shimizu, K. Yoshimatsu, R. Kawabata, T. Sakaguchi, K. Tokunaga, I. Yoshida, H. Asakura, M. Nagashima, Y. Kazuma, R. Nomura, Y. Horisawa, K. Yoshimura, A. Takaori-Kondo, M. Imai, S. Tanaka, S. Nakagawa, T. Ikeda, T. Fukuhara, Y. Kawaoka, K. Sato, G. P. J. Genotype Phenotype Japan, Nature, 2021, 602, 300-+
  DOI: 10.1038/s41586-021-04266-9
  
• Hydroxyapatite-Hybridized Double-Network Hydrogel Surface Enhances Differentiation of Bone Marrow-Derived Mesenchymal Stem Cells to Osteogenic Cells
  T. Kaibara, L. Wang, M. Tsuda, T. Nonoyama, T. Kurokawa, N. Iwasaki, J. P. Gong, S. Tanaka, K. Yasuda, Journal of Biomedical Materials Research Part A, 2021, 110, 747-760
  DOI: 10.1002/jbm.a.37324
  
• Aberrant Expression of MYD88 via RNA-Controlling CNOT4 and EXOSC3 in Colonic Mucosa Impacts Generation of Colonic Cancer
  M. Tsuda, M. Noguchi, T. Kurai, Y. Ichihashi, K. Ise, L. Wang, Y. Ishida, M. Tanino, S. Hirano, M. Asaka, S. Tanaka, Cancer Sci., 2021, 112, 5100-5113
  DOI: 10.1111/cas.15157
  
• Comprehensive Molecular Profiling of Pulmonary Pleomorphic Carcinoma
  M. Nagano, S. Kohsaka, T. Hayashi, T. Ueno, S. Kojima, A. Shinozaki-Ushiku, S. Morita, M. Tsuda, S. Tanaka, T. Shinohara, Y. Omori, F. Sugaya, H. Kato, Y. Narita, J. Nakajima, K. Suzuki, K. Takamochi, H. Mano, Npj Precision Oncology, 2021, 5,
  DOI: 10.1038/s41698-021-00201-3
  
• Loss of H3K27 Trimethylation Is Frequent in IDH1-R132H but Not in Non-Canonical IDH1/2 Mutated and 1p/19q Codeleted Oligodendroglioma: A Japanese Cohort Study
  U. Habiba, H. Sugino, R. Yordanova, K. Ise, Z. Tanei, Y. Ishida, S. Tanikawa, S. Terasaka, K. Sato, Y. Kamoshima, M. Katoh, M. Nagane, J. Shibahara, M. Tsuda, S. Tanaka, Acta Neuropathologica Communications, 2021, 9,
  DOI: 10.1186/s40478-021-01194-7
  
• Involvement of BMP and Wnt Signals Leading to Epithelial-Mesenchymal Transition in Colon Adenocarcinoma with Heterotopic Ossification
  N. Katono, M. Tsuda, J. Suzuka, Y. Oda, L. Wang, Z. Tanei, M. Tanino, T. Ohata, E. Nagabuchi, Y. Ishida, S. Kimura, T. Iwanaga, S. Tanaka, Annals of Clinical and Laboratory Science, 2021, 51, 271-276
  DOI:
  
• Rapid Reprogramming of Tumour Cells into Cancer Stem Cells on Double-Network Hydrogels
  J. Suzuka, M. Tsuda, L. Wang, S. Kohsaka, K. Kishida, S. Semba, H. Sugino, S. Aburatani, M. Frauenlob, T. Kurokawa, S. Kojima, T. Ueno, Y. Ohmiya, H. Mano, K. Yasuda, J. P. Gong, S. Tanaka, Nature Biomedical Engineering, 2021, , 15
  DOI: 10.1038/s41551-021-00692-2
  

2020

• Role of Dimerized C16orf74 in Aggressive Pancreatic Cancer: A Novel Therapeutic Target
  T. Kushibiki, T. Nakamura, M. Tsuda, T. Tsuchikawa, K. Hontani, K. Inoko, M. Takahashi, T. Asano, K. Okamura, S. Murakami, Y. Kurashima, Y. Ebihara, T. Noji, Y. Nakanishi, K. Tanaka, N. Maishi, K. Sasaki, WR. Park, T. Shichinohe, K. Hida, S. Tanaka, S. Hirano, Mol. Cancer Ther., 2020, 19, 187-198
  DOI: 10.1158/1535-7163.MCT-19-0491
  
• Isotope Microscopic Observation of Osteogenesis Process Forming Robust Bonding of Double Network Hydrogel to Bone
  T. Nonoyama, L. Wang, M. Tsuda, Y. Suzuki, R. Kiyama, K. Yasuda, S. Tanaka, K. Nagata, R. Fujita, N. Sakamoto, N. Kawasaki, H. Yurimoto, J. P. Gong, Advanced Healthcare Materials, 2020, ,
  DOI: 10.1002/adhm.202001731
  
• Chitin-Based Double-Network Hydrogel as Potential Superficial Soft-Tissue-Repairing Materials
  J. C. Huang, M. Frauenlob, Y. Shibata, L. Wang, T. Nakajima, T. Nonoyama, M. Tsuda, S. Tanaka, T. Kurokawa, J. P. Gong, Biomacromolecules, 2020, 21, 4220-4230
  DOI: 10.1021/acs.biomac.0c01033
  
• Integrin Alpha 4 Mediates ATDC5 Cell Adhesion to Negatively Charged Synthetic Polymer Hydrogel Leading to Chondrogenic Differentiation
  D. Hashimoto, S. Semba, M. Tsuda, T. Kurokawa, N. Kitamura, K. Yasuda, J. P. Gong, S. Tanaka, Biochemical and Biophysical Research Communications, 2020, 528, 120-126
  DOI: 10.1016/j.bbrc.2020.05.071
  
• Synthetic Poly(2-Acrylamido-2-Methylpropanesulfonic Acid) Gel Induces Chondrogenic Differentiation of ATDC5 Cells via a Novel Protein Reservoir Function
  S. Semba, N. Kitamura, M. Tsuda, K. Goto, S. Kurono, Y. Ohmiya, T. Kurokawa, J. P. Gong, K. Yasuda, S. Tanaka, Journal of Biomedical Materials Research Part A, 2020, ,
  DOI: 10.1002/jbm.a.37028
  
• Cisplatin Relocalizes RNA Binding Protein HuR and Enhances the Oncolytic Activity of E4orf6 Deleted Adenovirus
  U. Habiba, E. Hossain, A. Yanagawa-Matsuda, A. Chowdhury, M. Tsuda, A. U. Zaman, S. Tanaka, F. Higashino, Cancers, 2020, 12, 14
  DOI: 10.3390/cancers12040809
  
• Signaling Adaptor Protein Crk Is Involved in Malignant Feature of Pancreatic Cancer Associated with Phosphorylation of c-Met
  S. Uemura, L. Wang, M. Tsuda, J. Suzuka, S. Tanikawa, H. Sugino, T. Nakamura, T. Mitsuhashi, S. Hirano, S. Tanaka, Biochemical and Biophysical Research Communications, 2020, 524, 378-384
  DOI: 10.1016/j.bbrc.2020.01.105
  

2019

• Modulation and Characterization of the Double Network Hydrogel Surface-Bulk Transition
  M. Frauenlob, DR. King, HL. Guo, S. Ishihara, M. Tsuda, T. Kurokawa, H. Haga, S. Tanaka, JP. Gong, Macromolecules, 2019, 52, 6704-6713
  DOI: 10.1021/acs.macromol.9b01399
  
• Divergent Dynamics and Functions of ERK MAP Kinase Signaling in Development, Homeostasis and Cancer: Lessons from Fluorescent Bioimaging
  Y. Muta, M. Tsuda, M. Imajo, Cancers, 2019, 11, 513
  DOI: 10.3390/cancers11040513
  
• Autopsy Findings in the Early Stage of Amyotrophic Lateral Sclerosis with "Dropped Head" Syndrome
  S. Tanikawa, M. Tanino, L. Wang, M. Ishikawa, M. Miyazaki, M. Tsuda, Y. Orba, H. Sawa, K. Matoba, N. Nakamura, K. Nagashima, WW. Hall, S. Tanaka, Neuropathology, 2019, 39, 374-377
  DOI: 10.1111/neup.12583
  
• Exosomes Containing ErbB2/CRK Induce Vascular Growth in Premetastatic Niches and Promote Metastasis of Bladder Cancer
  K. Yoshida, M. Tsuda, R. Matsumoto, S. Semba, L. Wang, H. Sugino, M. Tanino, T. Kondo, K. Tanabe, S. Tanaka, Cancer Sci., 2019, 110, 2119-2132
  DOI: 10.1111/cas.14080
  

2018

• miR-23a Promotes Invasion of Glioblastoma via HOXD10-Regulated Glial-Mesenchymal Transition
  K. Yachi, M. Tsuda, S. Kohsaka, L. Wang, Y. Oda, S. Tanikawa, Y. Ohba, S. Tanaka, Signal Transduction and Targeted Therapy, 2018, 3,
  DOI: 10.1038/s41392-018-0033-6